| ID | Name |
| 13PDG | 1,3-diphosphateglycerate |
| 1-AMINO-PROPAN-2-OL | 1-amino-propan-2-ol |
| 2A3KB | 2-amino-3-oxobutanoate |
| 2MBECOA | 2-methylbut-2-enoyl-CoA |
| 2MBUTCOA | S-2-methyl-butyryl-CoA |
| 2MBUTLIPO | enzyme_N6-(S-[2-methylpropanoyl]dihydrolipoyl)lysine |
| 2METHYLCISACONITATE | 2-methyl-cis-aconitate |
| 2METHYLCITRATE | 2-methylcitrate |
| 2PCDPMDE | 2-phospho-4-(cytidine_5'-diphospho)-2-C-methyl-D-erythritol |
| 2PG | 2-phosphoglycerate |
| 2-PHOSPHO-L-LACTATE | 2-phospho-L-lactate |
| 3DDAH7P | 3-deoxy-D-arabino-heptulosonate-7-phosphate |
| 3MBECOA | 3-methylbut-2-enoyl-CoA |
| 3MBUTCOA | S-3-methyl-butyryl-CoA |
| 3MBUTLIPO | enzyme_N6-(S-[3-methylbutanoyl]dihydrolipoyl)lysine |
| 3PG | 3-phosphoglycerate |
| 3PSER | 3-phospho-serine |
| 3PSME | 5-enolpyruvyl-shikimate-3-phosphate |
| 4HPP | p-hydroxyphenylpyruvate |
| 4PPNCYS | R-4'-phosphopantothenoyl-L-cysteine |
| 4PPNTE | pantetheine_4'-phosphate |
| 4PPNTO | D-4'-phosphopantothenate |
| 5-AMINO-LEVULINATE | 5-amino-levulinate |
| 5MTA | 5'-methylthioadenosine |
| 5PARAPP | 5'-phosphoarabinose-pyrophosphate |
| 7-8-DIAMINONONANOATE | 7,8-Diaminononanoate |
| 8-AMINO7-OXONONANOATE | 8-amino-7-oxononanoate |
| 9-HEXADECENOATE | 9-hexadecenoate |
| 9-HEXADECENOYL-ACP | 9-hexadecenoyl-ACP |
| 9-HEXADECENOYL-COA | 9-hexadecenoyl-CoA |
| 9-OCTADECENOATE | 9-octadecenoate |
| 9-OCTADECENOYL-ACP | 9-octadecenoyl-ACP |
| 9-OCTADECENOYL-COA | 9-octadecenoyl-CoA |
| A160GL3P | A160GL3P |
| A6RP | 5-amino-6-(5'-phosphoribosylamino)uracil |
| A6RP5P | 5-amino-6-(5'-phosphoribitylamino)uracil |
| A6RP5P2 | 5-amino-6-(5'-phosphoribosylamino)uracil |
| AACCOA | acetoacetyl-CoA |
| ABUT | 2-aceto-2-hydroxy-butyrate |
| AC | acetate |
| AC1PIM1 | AC1PIM1 |
| AC1PIM2 | AC1PIM2 |
| AC1PIM3 | AC1PIM3 |
| AC2PIM1 | AC2PIM1 |
| AC2PIM2 | AC2PIM2 |
| AC2PIM3 | AC2PIM3 |
| AC3PIM1 | AC3PIM1 |
| AC3PIM2 | AC3PIM2 |
| AC3PIM3 | AC3PIM3 |
| AC3PIM4 | AC3PIM4 |
| AC3PIM5 | AC3PIM5 |
| AC4PIM1 | AC4PIM1 |
| AC4PIM2 | AC4PIM2 |
| AC4PIM3 | AC4PIM3 |
| AC4PIM5 | AC4PIM5 |
| AC4PIM6 | AC4PIM6 |
| AC4PIM7 | AC4PIM7 |
| ACACP | acetyl-ACP |
| ACAL | acetaldehyde |
| ACCOA | acetyl-CoA |
| ACETYLP | acetylphosphate |
| ACLAC | 2-acetolactate |
| ACP | acyl-carrier-protein |
| ACRCOA | acrylyl-CoA |
| ACTAC | acetoacetate |
| ACYL-MAS | ACYL-MAS |
| ACYL-TRE-S-COA | ACYL-TRE-S-COA |
| AD | adenine |
| ADCHOR | 4-amino-4-deoxychorismate |
| ADENOSYLCOBINAMIDE | adenosylcobinamide |
| ADENOSYLCOBINAMIDE-GDP | adenosylcobinamide-GDP |
| ADENOSYLCOBINIMIDE-P | adenosylcobinamide-P |
| ADENOSYL-COBRATE | adenosyl-cobyrate |
| ADENOSYL-COBRINICACID-A-C-DIAMI | adenosyl-cobyrinic |
| ADLIPO | enzyme_N6-(S-acetyldihydrolipoyl)lysine |
| ADN | adenosine |
| ADP | adenosine-diphosphate |
| AGL3P | 1-acyl-sn-glycerol-3P |
| AHHMD | 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine_diphosphate |
| AHHMP | 6-hydroxymethyl-dihydropterin |
| AHMMP | hydroxymethylpyrimidine |
| AHTD | 7,8-dihydroneopterin_3'-triphosphate |
| AICAR | amino-4-imidazolecarboxamide_ribotide |
| AIR | 5-aminoimidazole_ribonucleotide |
| AKG | α-ketoglutarate |
| AKP | 2-dehydropantoate |
| ALA | D-alanine |
| ALAALA | D-alanyl-D-alanine |
| AMINOACETONE | aminoacetone |
| AMP | adenosine-monophosphate |
| AMPMP | hydroxymethylpyrimidine_phosphate |
| AN | anthranilate |
| APS | adenylyl-sulfate |
| ARABINOGALACTAN_PEPTIDOGLYCA | arabinogalactan_peptidoglycan |
| ARABINOGALACTANDPP | arabinogalactan-decaprenylphosphate |
| ARAbr1brGALACTANDPP | ARA[1]GALACTANDPP |
| ARAFDPP | arabinofuranose-decaprenylphosphate |
| ARG | L-arginine |
| ARGSUCC | L-arginino-succinate |
| ASER | O-acetyl-L-serine |
| ASN | L-asparagine |
| ASP | L-aspartate |
| ASP4P | L-aspartyl-4-phosphate |
| ASPSA | L-aspartate-semialdehyde |
| ASUC | adenylo-succinate |
| ATP | adenosine-triphosphate |
| bALA | β-alanine |
| bDG1P | β-D-Glucose_1-phosphate |
| bDG6P | β-D-glucose-6-phosphate |
| bDGLC | β-D-glucose |
| BETA-KETO-C22-ACYL-ACP | BETA-KETO-C22-ACYL-ACP |
| BIOMASS | biomass |
| BIOTIN | biotin |
| BIOTIN-BCCP | biotin-BCCP |
| BIOTIN-CO2 | BCCP-biotin-CO2 |
| brn-1brPOLYP | (polyphosphate)(n-1) |
| brnbrPOLYP | (polyphosphate)(n) |
| BUTANOYL-COA | butanoyl-CoA |
| C78-3-OXY-MYCOLATE-ENZ | 3-oxo-C78-α-mycolate-ENZ |
| C78MYCOLATE-ENZ | C78-α-mycolate-ENZ |
| C78MYCOLATE-PP | C78-α-mycolate-PP |
| CAASP | carbamoyl-L-aspartate |
| CADA | cadaverine |
| CAIR | 4-carboxyaminoimidazole_ribonucleotide |
| cAMP | cyclic-AMP |
| CAP | carbamoyl-phosphate |
| CATECHOL | catechol |
| CBHCAP | 3-carboxy-2-hydroxy-4-methylpentanoate |
| CDP | cytidine-diphosphate |
| CDPDAG-TBA | CDP-diacylglycerol-TBA |
| CDPDG | CDP-diacylglycerol |
| CDPMDE | 4-(cytidine_5'-diphospho)-2-C-methyl-D-erythritol |
| CELB | cellobiose |
| cGMP | cyclic-GMP |
| CHOR | chorismate |
| CIS-DELTA-13-ENOYL-C32-ACYL-ACP | CIS-DELTA-13-ENOYL-C32-ACYL-ACP |
| CIS-DELTA-19-ENOYL-C38-ACYL-ACP | CIS-DELTA-19-ENOYL-C38-ACYL-ACP |
| CIS-DELTA-2-19,31-ENOYL-C50-ACYL- | CIS-DELTA-2-19,31-ENOYL-C50-ACYL-ACP |
| CIS-DELTA-2-19,37-ENOYL-C56-ACYL- | CIS-DELTA-2-19,37-ENOYL-C56-ACYL-ACP |
| CIS-DELTA-2-3,15-ENOYL-C34-ACYL-A | CIS-DELTA-2-3,15-ENOYL-C34-ACYL-ACP |
| CIS-DELTA-2-3,21-ENOYL-C40-ACYL-A | CIS-DELTA-2-3,21-ENOYL-C40-ACYL-ACP |
| CIS-DELTA-37-ENOYL-DIMETHY-HYDR | CIS-DELTA-37-ENOYL-DIMETHY-HYDROXY-C56-ACYL-ACP |
| CIS-DELTA-37-ENOYL-METHY-HYDRO | CIS-DELTA-37-ENOYL-METHY-HYDROXY-C56-ACYL-ACP |
| CIS-DELTA-3-DODECANOYL-COA | CIS-DELTA-3-DODECANOYL-COA |
| CIS-DELTA-3-ENOYL-C22-ACYL-ACP | CIS-DELTA-3-ENOYL-C22-ACYL-ACP |
| CIS-DELTA-5-TETRADECANOYL-COA | CIS-DELTA-5-TETRADECANOYL-COA |
| CIS-KETO-MEROACYL-ACP | CIS-KETO-MEROACYL-ACP |
| CIS-METHOXY-MEROACYL-ACP | CIS-METHOXY-MEROACYL-ACP |
| CIT | citrate |
| CITR | citrulline |
| CITxt | external_citrate |
| CL | cardiolipin |
| CMP | cytidine-monophosphate |
| CO2 | carbon_dioxide |
| CO2xt | external_carbon_dioxide |
| COA | coenzyme_A |
| COB-I | coenzyme |
| COB-II | COB-II |
| COB-III | COB-III |
| COB-II-RINICACID-A-C-DIAMIDE | cob(II)yrinic |
| COB-I-RINICACID-A-C-DIAMIDE | cob(I)yrinic |
| CO-II | Co2+ |
| CO-IIxt | external |
| COPROPORPHYRINOGEN-III | coproporphyrinogen_III |
| CPAD5P | 1-(o-carboxyphenylamino)-1'-deoxyribulose-5'-phosphate |
| CROTONOYLCOA | crotonoyl-CoA |
| CTP | cytidine-5'-triphosphate |
| CYCLOPROPYL-MEROACYL-ACP | CYCLOPROPYL-MEROACYL-ACP |
| CYS | L-cysteine |
| CYS-NG-INS | desacetylmycothiol_(1-D-myo-inosityl-2-(L-cysteinyl)amido-2-deoxy-α-D-glucopyranoside) |
| D-3-HYDROXY-C22-ACYL-ACP | D-3-HYDROXY-C22-ACYL-ACP |
| D6PGC | 6-phospho-D-gluconate |
| D6PGL | D-glucono-δ-lactone-6-phosphate |
| D6RP5P | 2,5-diamino-6-(ribosylamino)-4-(3H)-pyrimidinone_5'-phosphate |
| D8RL | 6,7-dimethyl-8-(1-D-ribityl)lumazine |
| DA | deoxyadenosine |
| DADP | deoxyadenosine-diphosphate |
| DAG | 1,2-diacylglycerol |
| DALA | D-alanine |
| DAPIM | L,L-diaminopimelate |
| DATP | deoxyadenosine-triphosphate |
| DB4P | 2,5-diamino-6-(ribosylamino)-4-(3H)-pyrimidinone_5'-phosphate |
| DCDP | deoxycytidine-diphosphate |
| DCMP | deoxycytidine_monophosphate |
| DCTP | deoxycytidine-triphosphate |
| DECANOATE | decanoate |
| DECANOYL-COA | decanoyl-CoA |
| DETHIOBIOTIN | dethiobiotin |
| DG | DG |
| DGDP | deoxyguanosine-diphosphate |
| DGLN | D-glutamine |
| DGLU | D-glutamate |
| DGLYCERATE | D-glycerate |
| DGMP | deoxyguanosine-monophosphate |
| DGTP | deoxyguanosine-triphosphate |
| DHAP | dihydroxyacetone-phosphate |
| DHF | 7,8-dihydrofolate |
| DHLIPOYLPROTEIN | enzyme_N6-(dihydrolipoyl)lysine |
| DHMVA | 2,3-dihydroxy-3-methylvalerate |
| DHN | 1,4-dihydroxy-2-naphthoate |
| DHP | dihydro-neo-pterin |
| DHPT | 7,8-dihydropteroate |
| DHSK | 3-dehydro-shikimate |
| DIACYLTREHALOSE | diacyltrehalose. |
| DIHYDRODIPICOLINATE | L-2,3-dihydrodipicolinate |
| DIHYDROXYMETHYLPENTANOATE | Dihydroxy-methylpentanoate |
| DIM | dimycocerosate |
| DIM-CYTO | cytoplasmic_dimycocerosate |
| DIMGP | D-erythro-imidazole-glycerol-phosphate |
| DIN | deoxyinosine |
| DLIPO | DLIPO |
| DMK | 3-demethylubiquinone-8 |
| DMPP | dimethylallyl-pyrophosphate |
| DNA | deoxyribonucleic |
| DOCOSANOATE | docosanoate |
| DOCOSANOYL-ACP | docosanoyl-ACP |
| DOCOSANOYL-COA | docosanoyl-CoA� |
| DODECANOATE | dodecanoate |
| DODECANOYL-COA | dodecanoyl-CoA |
| DOROA | dihydroorotate |
| DPCOA | dephospho-CoA |
| DPP | dimethylallyl-pyrophosphate |
| DPPARA | decaprenylphosphate-arabinose |
| DPPPR | DPPPR |
| DPPR | DPPR |
| DQT | 3-dehydroquinate |
| DR1P | deoxyribose-1-phosphate |
| DR5P | deoxyribose-5-phosphate |
| DT | DT |
| DTDP | deoxythymidine-5'-diphosphate |
| DTDP4DH6DGLC | dTDP-4-dehydro-6-deoxy-D-glucose |
| DTDP4DH6DMAN | dTDP-4-dehydro-6-deoxy-L-mannose |
| DTDPGLC | dTDP-glucose� |
| DTDPRHAM | dTDP-α-L-rhamnose |
| DTMP | deoxythymidine |
| DTTP | deoxythymidine |
| DUDP | deoxyuridine-diphosphate� |
| DUMP | deoxyuridine-phosphate |
| DUTP | deoxyuridine-triphosphate� |
| DX5P | 1-deoxy-D-xylulose |
| E4P | D-erythrose-4-phosphate |
| EICOSANOATE | eicosanoate |
| EICOSANOYL-ACP | eicosanoyl-ACP |
| EICOSANOYL-COA | eicosanoyl-CoA |
| ETH | ethanol |
| F1P | fructose-1-phosphate |
| F420 | coenzyme |
| F420-0 | F420-0 |
| F6P | D-fructose-6-phosphate |
| FAD | flavin |
| FADH2 | flavin |
| FDP | fructose-1,6-bisphosphate |
| FE2 | ferrous |
| FE3 | ferric |
| FE3xt | external |
| FERI | oxidized |
| FERO | reduced |
| FGAM | 5-phosphoribosyl-N-formylglycineamidine |
| FGAR | 5'-phosphoribosyl-N-formylglycineamide |
| FMN | flavin_mononucleotide� |
| FO | FO |
| FOR | formate |
| FPP | trans, |
| FRU | fructose |
| FTHF | N10-formyl-THF |
| FUACAC | 4-fumaryl-acetoacetate |
| FUC1P | β-L-fucose_1-phosphate |
| FUM | fumarate |
| G1P | α-D-glucose_1-phosphate |
| G3P | D-glyceraldehyde-3-phosphate |
| G6P | β-D-glucose-6-phosphate |
| GA1P | D-glucosamine-1-phosphate |
| GA6P | D-glucosamine-6-phosphate |
| GABA | 4-aminobutyrate_(GABA) |
| GAL1P | α-D-galactose_1-phosphate |
| GALACTANDPP | galactan-decaprenylphosphate |
| GAR | 5-phospho-ribosyl-glycineamide |
| GDP | guanosine_diphosphate |
| GDPDHDOGAL | GDP-4-dehydro-6-L-deoxygalactose |
| GDPDHDOMAN | GDP-4-dehydro-6-deoxy-D-mannose |
| GDPFUC | GDP-L-fucose |
| GDPMAN | guanosine_diphosphate_mannose |
| GGPP | geranylgeranyl_diphosphate |
| GL | Glycerol |
| GL3P | glycerol-3-phosphate |
| GLAC | D-galactose |
| GLAL | glycolaldehyde |
| GLC | β-D-glucose |
| GLCxt | external_β-D-glucose |
| GLN | glutamine |
| GLU | glutamate |
| GLU1SEMIALD | glutamate-1-semialdehyde |
| GLUGSAL | L-glutamate_γ-semialdehyde |
| GLUP | L-glutamate-5-phosphate |
| GLUT | GLUT |
| GLUTCOA | GLUTCOA |
| GLX | glyoxylate |
| GLY | glycine |
| GLYCOLATE | glycolate |
| GMP | guanosine-monophosphate |
| GN | guanine |
| GPP | geranyl-PP |
| GSN | guanosine |
| GTP | guanosine-triphosphate |
| GUAIACOL | guaiacol |
| H | proton |
| H2O2 | hydrogen_peroxide |
| H2S | hydrogen_sulfide |
| H2SO3 | sulfurous_acid_ |
| HBA | salicylate_(o-hydroxybenzoic_acid) |
| HCO3 | bicarbonate |
| HCYS | L-homocysteine |
| HEME-FE2 | HEME-FE2 |
| HEME-FE3 | HEME-FE3 |
| HEMT | 4-methyl-5-(β-hydroxyethyl)thiazole |
| HEPPP | HEPPP |
| HEPTADECANOATE | heptadecanoate |
| HEPTADECANOYL-ACP | heptadecanoyl-ACP |
| HEPTADECANOYL-COA | heptadecanoyl-CoA |
| HEPTANOYL-COA | heptanoyl-CoA |
| HEXACOSANOATE | hexacosanoate |
| HEXACOSANOYL-ACP | hexacosanoyl-ACP |
| HEXACOSANOYL-COA | hexacosanoyl-CoA |
| HEXACOSANOYL-COA-CO2 | hexacosanoyl-CoA-CO2 |
| HEXADECANOATE | hexadecanoate |
| HEXADECANOYL-ACP | hexadecanoyl-ACP |
| HEXADECANOYL-COA | hexadecanoyl-COA |
| HEXADECANOYL-MAS | hexadecanoyl-MAS |
| HEXANOATE | hexanoate |
| HEXANOYL-ACP | hexanoyl-ACP |
| HEXANOYL-COA | hexanoyl-CoA |
| HIBUT | 3-hydroxy-isobutyrate |
| HIBUTCOA | 3-hydroxy-isobutyryl-CoA |
| HIS | L-histidine |
| HISOL | histidinol |
| HISOLP | L-histidinol-phosphate |
| HMB4PP | 1-hydroxy-2-methyl-2-(E)-butenyl_4-diphosphate |
| HMBUTCOA | 3-hydroxybutyryl-CoA |
| HMGLUTCOA | 3-hydroxy-3-methyl-glutaryl-CoA |
| HOMOGEN | homogentisate |
| HPCOA | HPCOA |
| HPPP | HPPP |
| HSER | homoserine |
| HYDROGENOBYRINATE | hydrogenobyrinate |
| HYDROGENOBYRINATE-A-C-DIAMIDE | hydrogenobyrinate_a,c_diamide |
| HYDROXYAKG | D-4-hydroxy-2-keto-glutarate |
| HYDROXYMETHYLBILANE | hydroxymethylbilane |
| HYDROXYPHTHIOCERANOYL-COA | hydroxyphthioceranoyl-CoA |
| HYXN | hypoxanthine |
| IBUTCOA | IBUTCOA |
| IBUTLIPO | IBUTLIPO |
| ICHOR | isochorismate |
| ICIT | isocitrate |
| IDP | inosine_diphosphate |
| IGP | indole-3-glycerol-phosphate |
| ILE | L-isoleucine |
| IMACP | imidazole_acetol-phosphate |
| IMP | inosine-5'-phosphate |
| INS | inosine |
| IP | inositol_phosphate |
| IPP | Δ3-isopentenyl-PP |
| IPPMAL | 2-isopropylmalate |
| ISUCC | iminoaspartate_(α-iminosuccinate) |
| ITP | inosine_triphosphate |
| LAC | D-lactate |
| LACTAL | lactaldehyde |
| LAM | lipoarabinomannan |
| LEU | L-leucine |
| LIPID1 | LIPID1 |
| LIPID2 | LIPID2 |
| LIPID2-AMIDATED | LIPID2-AMIDATED |
| LIPO | enzyme |
| LIPOYLPROTEIN | H-protein-(lipoyl)lysine |
| LLAC | lactate |
| LLCT | cystathionine |
| LM | ipomannan |
| LPPG | ? |
| LYS | L-lysine |
| MAACCOA | MAACCOA |
| MACAC | 4-maleyl-acetoacetate |
| MACRCOA | methylacrylyl-CoA |
| MAG | monoacylglycerol |
| MAHMPPP | 4-amino-5-hydroxymethyl-2-methylpyrimidine-pyrophosphate |
| MAL | malate |
| MALACP | malonyl-ACP |
| MALCOA | malonyl-CoA |
| MAN | mannose |
| MAN1P | α-D-mannose_1-phosphate |
| MAN6P | mannose-6-phosphate |
| MAPC | mycolic_acid�arabinogalactan-peptidoglycan_complex |
| MAS | MAS |
| MBT | mycobactin |
| MBTA-HOLO | mycobactinA-HOLO |
| MBTA-SAL | mycobactinA-SAL |
| MBTB-HOLO | mycobactinB-HOLO |
| MBTB-SER | mycobactinB-SER |
| MBTCD-HBA | mycobactinCD-HBA |
| MBTCD-HOLO | mycobactinCD-HOLO |
| MBTE-HOLO | mycobactinE-HOLO |
| MBTE-LYS | mycobactinE-LYS |
| MBTF-HOLO | mycobactinF-HOLO |
| MBTF-LYS | mycobactinF-LYS |
| MBTSEC | mycobactinSEC |
| MBTWALL | mycobactinWALL |
| MDAPIM | meso-diaminopimelate |
| MDE4P | 2-C-methyl-D-erythritol-4-phosphate |
| MDECPP | 2-C-methyl-D-erythritol-2,4-cyclodiphosphate |
| MEROACYL-AMP | meroacyl-AMP |
| MET | methionine |
| METHF | 5,10-methenyl-THF |
| METHYMALONATE | methylmalonate |
| METTHF | 5,10-methylene-THF |
| MGLUTCOA | 3-methylglutaconyl-CoA |
| MI | myo-inositol |
| MK | ubiquinone-8 |
| MKH2 | ubiquinol-8 |
| MLT | maltose |
| MO2 | molybdenum_ion |
| MO2xt | external_molybdenum_ion |
| MOAD-COOH | MOAD-COOH |
| MOAD-COSH | MOAD-COSH |
| MOLYBDENUM | molybdenum |
| MOLYBDOPTERIN | molybdopterin |
| MOLYBDOPTERIN-GDP | molybdopterin_guanine_dinucleotide |
| MOP | 4-methyl-2-oxopentanoate |
| MPD | mannosyl-�-1-phosphodolichol |
| MPET | 4-methyl-5-(β-hydroxyethyl)thiazole_phosphate |
| MTHF | 5-methyl-THF |
| MTHPTGLU | MTHPTGLU |
| MTR1P | 5-methylthioribose-1-phosphate |
| MYCOCEROSOYL-MAS | MYCOCEROSOYL-MAS |
| MYCOLIPANOIC-ACP | mycolipanoic-ACP |
| MYCOLIPDIENOYL-ACP | MYCOLIPDIENOYL-ACP |
| MYCOLIPENOYL-ACP | MYCOLIPENOYL-ACP |
| MYCOSIDE_B | mycoside_B |
| MYCOTHIOL | mycothiol |
| MYCOTHIONE | mycothione |
| NAAD | deamido-NAD |
| NAC | nicotinate |
| NACD | nicotinate_ribonucleoside |
| NACN | nicotinate_nucleotide |
| NAD | nicotinamide_adenine_dinucleotide |
| NADH | nicotinamide_adenine_dinucleotide_-_reduced |
| NADP | nicotinamide_adenine_dinucleotide_phosphate |
| NADPH | Nicotinamide_adenine_dinucleotide_phosphate_-_reduced |
| NAGA1P | N-acetyl-glucosamine-1-phosphate |
| NAGDPP | N-acetyl-glucosamine-DPP |
| NAG-INS | 1-D-myo-inosityl-2-acetamido-2-deoxy-α-D-glucopyranoside |
| NAGLU | N-acetyl-L-glutamate |
| NAGLUP | N-acetylglutamyl-phosphate |
| NAGLUS | N-acetyl-L-glutamate_5-semialdehyde |
| NAM | nicotinamide |
| NAMD | nicotinamide_riboside |
| NAMN | nicotinamide_mononucleotide |
| NAORN | N-acetyl-L-ornithine |
| NG-INS | glucosaminyl-inositol |
| NH3 | ammonia |
| NH3xt | external_ammonia |
| NO2 | nitrite |
| NO2xt | external_nitrite |
| NO3 | nitrate_ |
| NONADECANOATE | nonadecanoate |
| NONADECANOYL-ACP | nonadecanoyl-ACP |
| NONADECANOYL-COA | nonadecanoyl-COA |
| NONANOYL-COA | nonanoyl-COA |
| NPP | nerylpyrophosphate |
| NPRAN | N-(5'-phosphoribosyl)-anthranilate |
| O2 | oxygen |
| O2xt | external_oxygen |
| OA | oxaloacetate |
| OAHSER | O-acetyl-L-homoserine |
| OBUT | 2-oxobutanoate |
| OCTACOSANOYL-ACP | octacosanoyl-ACP |
| OCTACOSANOYL-COA | octacosanoyl-COA |
| OCTADECANOATE | octadecanoate |
| OCTADECANOYL-ACP | octadecanoyl-ACP |
| OCTADECANOYL-COA | octadecanoyl-CoA |
| OCTANOYL-COA | octanoyl-CoA |
| OICAP | OICAP |
| OMP | orotidine-5'-phosphate |
| OMVAL | 2-keto-3-methyl-valerate |
| OPP | octaprenyl_diphosphate |
| ORN | ornithine |
| OROA | orotate |
| OSB | O-succinylbenzoate |
| OSBCOA | O-succinylbenzoyl-CoA |
| OSLHSER | O-succinyl-L-homoserine |
| OTHIO | thioredoxin_disulfide |
| OXOMETHYLPENTANOATE | 2-oxo-3-methylpentanoate |
| P5C | pyrroline_5-carboxylate |
| PA | L-phosphatidate |
| PABA | para-aminobenzoic_acid |
| PANT | L-pantoate |
| PAP | adenosine_3',5'-bisphosphate |
| PAPS | 3'-phosphoadenylyl-sulfate |
| PA-TBA | PA-tuberculostearic_acid |
| PE | L-1-phosphatidyl-ethanolamine |
| PENTADECANOATE | pentadecanoate |
| PENTADECANOYL-ACP | pentadecanoyl-ACP |
| PENTADECANOYL-COA | pentadecanoyl-CoA |
| PENTA-METHYL-TRICONTANOYL | PENTA-METHYL-TRICONTANOYL |
| PENTA-METHYL-TRICONTANOYL-COA | PENTA-METHYL-TRICONTANOYL-COA |
| PENTANOYL-COA | pentanoyl-CoA |
| PEP | phosphoenolpyruvate |
| PEPTIDOGLYCAN | peptidoglycan |
| PG | L-1-phosphatidyl-glycero |
| PGL-TB | phenolglycolipid_antigen_(PLG-Tb_1) |
| PGP | L-1-phosphatidylglycerol-phosphate |
| PHDIM | phthiocerol |
| PHDIM-CYTO | cytoplasmic_phthiocerol_dimycocerosate |
| PHDIMRHAM1 | PHDIMRHAM1 |
| PHDIMRHAM2 | PHDIMRHAM2 |
| PHE | phenylalanine |
| PHEN | prephenate |
| PHENOLPHTHIODIOLONE-A | phenolphthiodiolone |
| PHOSPHATIDYLCHOLINE | phosphatidylcholine |
| PHOSPHO-PENTA-METHYL-TRICONTA | PHOSPHO-PENTA-METHYL-TRICONTANOYL-COA |
| PHP | 3-phospho-hydroxypyruvate |
| PHPAA-COA | PHPAA-COA |
| PHPYR | phenylpyruvate |
| PHSER | O-phospho-L-homoserine |
| PHTHIODIOLONE-A | phthiodiolone_A |
| PI | phosphate |
| PIMELOYL-COA | pimeloyl-CoA |
| PIMS | phosphatidyl_myo-inositol_mannosides |
| PI-TBA | PI-tuberculostearic_acid |
| PIxt | external_phosphate |
| P-L-GLX | poly-L-glutamate/glutamine |
| PNTO | pantothenate |
| POLYACYLTREHALOSE | polyacyltrehalose |
| PORPHOBILILOGIN | porphobilinogen |
| ppGpp | ppGpp |
| PPI | pyrophosphate |
| PPM | polyprenolmannose |
| PPPI | Inorganic_triphosphate |
| PPPP | PPPP |
| PPTC | phenolphthiocerol |
| PPTT | PPTT |
| PRAM | 5-phosphoribosylamine |
| PRBAMP | phosphoribosylformiminoAICAR-phosphate |
| PRBATP | 5-phosphoribosyl_1-pyrophosphate |
| PRECORIN-2 | precorrin-2 |
| PRECORIN-3A | precorrin-3A |
| PRECORIN-3B | precorrin-3B |
| PRECORIN-4B | precorrin-4B |
| PRECORIN-5 | precorrin-5 |
| PRECORIN-6X | precorrin-6x |
| PRECORIN-6Y | precorrin-6y |
| PRECORIN-8X | precorrin-8x |
| PRECURSOR-Z | precursor-Z |
| PRFICA | phosphoribosyl-formamido-carboxamide |
| PRFP | phosphoribosylformiminoAICAR-phosphate |
| PRLP | phosphoribulosylformimino-AICAR-P |
| PRO | proline |
| PROPANOATE | propanoate |
| PROPIONYLACP | propionyl-ACP |
| PROPIONYLCOA | propionyl-CoA |
| PROPIONYLP | propionyl-P |
| PROTEIN | average_mycobacterial_protein |
| PROTOHEME-FE2 | protoheme |
| PROTOPORPHYRIN-IX | protoporphyrin_IX |
| PROTOPORPHYRINOGEN | protoporphyrinogen_IX |
| PRPP | 5-phosphoribosyl_1-pyrophosphate |
| PS | phosphatidylserine |
| PTC | phthiocerol |
| PTHIOCERANOYL-COA | phthioceranoyl-COA |
| PTRSC | putrescine |
| PTT | PTT |
| PURI5P | pseudouridine_5'-phosphate |
| PYR | pyruvate |
| QA | quinolinate |
| R1P | ribose-1-phosphate |
| R5P | D-ribose-5-phosphate |
| RHAMNAGDPP | Rha-GlcNAc-DPP |
| RHYDROXYBUTANOYL | (R)-3-Hydroxybutanoyl |
| RIB | Ribose |
| RIBFLAV | riboflavin |
| RL5P | D-ribulose-5-phosphate |
| RMMALONYLACP | (R)-methylmalonyl-ACP |
| RMMALONYLCOA | (R)-methylmalonyl-CoA |
| RNA | ribonucleic_acid |
| RTHIO | reduced_thioredoxin |
| S7P | D-sedoheptulose-7-phosphate |
| SAH | S-adenosyl-L-homocysteine |
| SAICAR | 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole |
| SAL | salicylate |
| SAM | S-adenosyl-L-methionine |
| SAM-2-OXOBUTANOATE | S-adenosyl-4-methylthio-2-oxobutanoate |
| SAOPIM | N-succinyl-2-amino-6-ketopimelate |
| SAP | H-protein-S-(aminomethyldihydrolipoyl)lysine |
| SDAPIM | N-succinyl-L,L-2,6-diaminopimelate |
| SER | serine |
| SHCHC | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate |
| SHYDROXYBUTANOYL | SHYDROXYBUTANOYL |
| SL-1 | sulfolipid-1 |
| SL1278-CYTO | cyptoplasmic_SL1278_(SL-1_precursor) |
| SL1278-WALL | wallbound_SL1278_(SL-1_precursor) |
| SLF | sulfate |
| SLFxt | external_sulfate |
| SMALLMOLECULES | small_molecules |
| SME | shikimate |
| SME3P | shikimate-3-phosphate |
| SMMALONYLCOA | (S)-methyl-malonyl-CoA |
| SPRMD | spermidine |
| SUC | sucrose |
| SUCC | succinate |
| SUCCOA | succinyl-CoA |
| SUCCSAL | succinate_semialdehyde_(succinic_semialdehyde) |
| SUGARS | sugars |
| T3 | D-glyceraldehyde-3-phosphate |
| TAG | triacylglycerol |
| TETRACOSANOATE | tetracosanoate |
| TETRACOSANOYL-ACP | tetracosanoyl-ACP |
| TETRACOSANOYL-COA | tetracosanoyl-CoA |
| TETRADECANOATE | tetradecanoate_ |
| TETRADECANOYL-ACP | tetradecanoyl-ACP |
| TETRADECANOYL-COA | tetradecanoyl-CoA |
| TETRAHYDRODIPICOLINATE | tetrahydrodipicolinate |
| THF | tetrahydrofolate |
| THFG | THF-L-glutamate |
| THI | thiamine |
| THIP | thiamine-phosphate |
| THPTGLU | tetrahydropteroyltri-L-glutamate |
| THR | threonine |
| THY | THY |
| TRANS-DELTA-2-DODECANOYL-COA | TRANS-DELTA-2-DODECANOYL-COA |
| TRANS-DELTA-2-ENOYL-C22-ACYL-AC | TRANS-DELTA-2-ENOYL-C22-ACYL-ACP |
| TRANS-DELTA-2-HYDROXY-DODECAN | TRANS-DELTA-2-HYDROXY-DODECANOYL-COA |
| TRANS-KETO-MEROACYL-ACP | TRANS-KETO-MEROACYL-ACP |
| TRANS-METHOXY-MEROACYL-ACP | TRANS-METHOXY-MEROACYL-ACP |
| TRE | trehalose |
| TRE6P | trehalose_6-phosphate |
| TREHALOSEDIMYCOLATE | trehalosedimycolate_(TDM) |
| TREHALOSEMONOMYCOLATE | trehalosemonomycolate_(TMM) |
| TREHALOSEMONOMYCOLATEbrCYbr | cytoplasmic_trehalosemonomycolate_(TMM) |
| TREHALOSEMONOMYCOLATE-P | cytoplasmic_trehalosemonomycolate-P |
| TRE-S | sulfated_trehalose |
| TRIDECANOYL-COA | tridecanoyl-CoA |
| TRNA-GLU | tRNAGlu |
| TRP | tryptophan |
| TS-COSH-TYR | L-tyrosine/ThiS-COSH_complex |
| TS-PROTEIN | ThiS_protein/C1of_Tyrosine,_4hydroxybenzyl_alcohol_complex |
| TUBERCULOSTEROYL-ACP | Tuberculostearic |
| TYR | tyrosine |
| UDP | uridine-diphosphate |
| UDPbrNAM:NGMbrAGMDAPIM | UDP[NAM:NGM]AGMDAPIM |
| UDPbrNAM:NGMbrAGMDAPIMAA | UDP[NAM:NGM]AGMDAPIMAA |
| UDPbrNAM:NGMbrALA | UDP[NAM:NGM]ALA |
| UDPbrNAM:NGMbrALAGLU | UDP[NAM:NGM]ALAGLU |
| UDPDGLUC | UDPDGLUC |
| UDPG | UDP-D-glucose |
| UDPGAL | UDP-galactose |
| UDPGALF | UDP-D-galacto-1,4-furanose |
| UDPNACVG | UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine) |
| UDPNAG | UDP-N-acetyl-D-glucosamine |
| UDPNAGPEE | UDP-GlcNAc-pyruvate_enol_ether |
| UDPNAM | UDP-N-acetylmuramate |
| UDPNGM | UDPNGM |
| UMP | uridine-monophosphate |
| UNDECANOYL-COA | undecanoyl-CoA |
| URA | uracil |
| UREA | urea |
| UROPORPHYRINOGEN-III | uroporphyrinogen-III |
| UTP | uridine-triphosphate |
| VAL | valine |
| X5P | D-xylulose-5-phosphate |
| XAN | xanthine |
| XMP | xanthosine-5-phosphate |
| XTSINE | xanthosine |