[University of Surrey]
[Division of Microbial Sciences]
Surrey Computational Cell Biology Server
Genome Scale Metabolic Reaction Networks:
Mycobacterium tuberculosis (Beste et al. 2007), original in-vitro model.
[Run simulation]
[Reactions]
[Metabolites]
[SBML]
Mycobacterium tuberculoisis (Beste et al. 2007), original in vivo model.
[Run simulation]
[Reactions]
[Metabolites]
[SBML]
Mycobacterium tuberculosis (Beste et al., 2007) slow growth rate
[Run simulation]
[Reactions]
[Metabolites]
[SBML]
Streptomyces coelicolor (Borodina et al, 2005)
[Run simulation]
[Reactions]
[Metabolites]
[SBML]
Streptomyces lividans (according to CGH with S. coelicolor)
[Run simulation]
[Reactions]
[Metabolites]
[SBML]
Neisseria meningiatis Nmb_iTM560
[Run simulation]
[Reactions]
[Metabolites]
[SBML]
Dynamic models:
Stochastic kinetic model of two component system signalling
[Publication]
[SBGN/SBML file, STOCKS software and model files]
Tools:
Genome Scale Metabolic Network modelling server.
E-mail
Andrzej Kierzek
for free server account.
Download SurreyFBA-1.32 with JyMet
(Gevorgyan, Bushell, Avignone-Rossa, Kierzek, Bioinformatics. 2011, 27:433-434.)
[PubMed]
)
ACORN project
Stoichiomix - a collection of web-based tools and data resources for reconstruction, analysis and mining of genome-scale metabolic networks.
